CABS-dock: 54b9a7926d873e0

Project name: 54b9a7926d873e0

Status: done

submitted: 2026-01-14 18:20:00, status changed: 2026-01-15 05:24:34

Project settings

Protein sequence(s)	QIIPSNTTSPPTNSTSPPTNATAPAPSPTNTITKAANITKPGCPKQCGNVTVPYPFGIGSGCALDPMFEIDCNVTTPFIGNIQIYDISDAEMRISNFINTKCYSQTGVLIQDIPSWITLGTKSPYTFSTLNRFIVVGCDDGAIVSGNNFANGCPSLCTSTNDIVKGKCMGFGCCQITIPKGLKFFNTTMVTTRNHSLIWSFNPCGHSFLGEASRFEFQGIEDLSDVNFANKIRNNVPIVLDWAIGNLSCVEARKSNDYACLNNSQCVDSDTSLGGYRCSCNSGYIGNPYIGSGCQDIDECADPNTNSCEKICTNIPGSYNCSCPEGYTGDGRKNGRGCIAPNSNSEFPWIK input pdb
Peptide sequence	TIDNVHAENVGEDMITVKGEGGAKV
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCHHCCCCCCEEEECCCCCCC

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	40.1448	2.56571	14.5569	103
cluster_2.pdb ( medoid)	24.6189	4.2244	32.7174	104
cluster_3.pdb ( medoid)	17.0528	6.45056	25.5685	110
cluster_4.pdb ( medoid)	11.291	4.87115	9.22899	55
cluster_5.pdb ( medoid)	10.943	9.32103	23.9607	102
cluster_6.pdb ( medoid)	8.90621	12.2387	38.8614	109
cluster_7.pdb ( medoid)	8.75377	10.167	19.8291	89
cluster_8.pdb ( medoid)	5.27176	11.3814	27.2189	60
cluster_9.pdb ( medoid)	3.75846	11.7069	29.6278	44
cluster_10.pdb ( medoid)	1.6681	14.3876	36.62	24