CABS-dock: 55a7636c514c9fa

Project name: 55a7636c514c9fa

Status: done

submitted: 2025-12-23 16:29:47, status changed: 2025-12-24 00:29:52

Project settings

Protein sequence(s)	SSVFVPDEWEVSREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIETDRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMDGGYLDQPDNCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDDLHPSFPEVSFFHSEENK input pdb
Peptide sequence	YERGFFYEHDY
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	35.6839	5.80093	36.0298	207
cluster_2.pdb ( medoid)	33.515	3.4313	13.1197	115
cluster_3.pdb ( medoid)	31.3796	3.69667	21.1921	116
cluster_4.pdb ( medoid)	29.2835	4.13202	28.968	121
cluster_5.pdb ( medoid)	21.5407	3.94602	9.77728	85
cluster_6.pdb ( medoid)	12.0187	8.15397	26.6477	98
cluster_7.pdb ( medoid)	11.0641	7.77291	25.4044	86
cluster_8.pdb ( medoid)	8.31447	9.38123	18.8629	78
cluster_9.pdb ( medoid)	4.00514	10.2368	26.3728	41
cluster_10.pdb ( medoid)	2.98574	17.751	37.4049	53