CABS-dock: 55d0bebe7a6b76b

Project name: 55d0bebe7a6b76b

Status: done

submitted: 2026-06-24 06:51:32, status changed: 2026-06-24 11:30:50

Project settings

Protein sequence(s)	CIKYLLFVFNFVFWLAGGVILGVALWLRHDPQTTNLLYLELGDKPAPNTFYVGIYILIAVGAVMMFVGFLGCYGAIQESQCLLGTFFTCLVILFACEVAAGIWGFVNKDQIAKDVKQFYDQALQQAVVDDDANNAKAVVKTFHETLDCCGSSTLTALTTSVLTSNLCPSGSNIISNLFKEDCHQKIDDLFSGKLYLIGIAAIVVAVIMIFEMILSMVL input pdb
Peptide sequence	RGLVSQLQIQQ
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	24.284	3.41789	12.9468	83
cluster_2.pdb ( medoid)	24.0762	10.8821	35.0392	262
cluster_3.pdb ( medoid)	23.1236	4.93003	32.9815	114
cluster_4.pdb ( medoid)	20.6335	6.73661	23.7822	139
cluster_5.pdb ( medoid)	18.7439	5.54848	24.1608	104
cluster_6.pdb ( medoid)	11.4555	6.45979	21.2665	74
cluster_7.pdb ( medoid)	10.3274	8.23051	20.9303	85
cluster_8.pdb ( medoid)	6.58252	9.26697	25.2695	61
cluster_9.pdb ( medoid)	3.26452	15.0099	38.831	49
cluster_10.pdb ( medoid)	3.05398	9.4958	18.152	29