CABS-dock: 569e3e5e746e78

Project name: 569e3e5e746e78

Status: done

submitted: 2026-06-03 18:52:34, status changed: 2026-06-03 22:09:19

Project settings

Protein sequence(s)	ALIDVVVVCDESNSIYPWDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRVVFNLNTYKTKEEMIVATSQTSQYGGDLTNTFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESHDGSMLKAVIDQCNHDNILRFGIAVLGYLNRNALDTKNLIKEIKAIASIPTERYFFNVSDEAALLEKAG input pdb
Peptide sequence	GPPGPPGFPGERGPPGPPGPP
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	52.2338	1.68473	9.80488	88
cluster_2.pdb ( medoid)	16.3365	7.03946	36.7669	115
cluster_3.pdb ( medoid)	12.834	11.8436	33.8963	152
cluster_4.pdb ( medoid)	9.28182	14.76	31.9216	137
cluster_5.pdb ( medoid)	7.64829	15.2975	33.7909	117
cluster_6.pdb ( medoid)	7.14507	13.5758	32.5201	97
cluster_7.pdb ( medoid)	6.86699	15.1449	33.7696	104
cluster_8.pdb ( medoid)	5.72995	9.42417	21.7239	54
cluster_9.pdb ( medoid)	5.04902	15.0524	31.1088	76
cluster_10.pdb ( medoid)	4.4345	13.5303	37.0119	60