CABS-dock: 56f0016821c4319

Project name: 56f0016821c4319

Status: done

submitted: 2025-11-12 10:47:20, status changed: 2025-11-12 11:41:55

Project settings

Protein sequence(s)	SGTTLFVALYDYEEARTEDDLSFHHKGEKFQQILNSSEGDDWWEARSLTTTGETGYYIPSNYVAPV input pdb
Peptide sequence	GSRSRTPSLPTPPTR
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCC

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	27.7772	7.52415	26.9844	209
cluster_2.pdb ( medoid)	26.6764	5.51049	13.4354	147
cluster_3.pdb ( medoid)	16.4492	8.69343	24.3567	143
cluster_4.pdb ( medoid)	11.2386	5.07183	11.1207	57
cluster_5.pdb ( medoid)	9.60398	10.1	24.4269	97
cluster_6.pdb ( medoid)	8.51351	7.86984	19.4963	67
cluster_7.pdb ( medoid)	7.5507	10.595	20.7896	80
cluster_8.pdb ( medoid)	7.4162	11.5962	28.8916	86
cluster_9.pdb ( medoid)	5.86532	6.99024	14.8307	41
cluster_10.pdb ( medoid)	5.40884	13.4964	29.586	73