CABS-dock: 57751cf681d4f1b

Project name: 57751cf681d4f1b

Status: done

submitted: 2026-04-02 08:21:46, status changed: 2026-04-02 13:58:27

Project settings

Protein sequence(s)	SHDDIVTRMKNIECIELGRHRLKPWYFSPYPQELTTLPVLYLCEFCLKYGRSLKCLQRHLTKCDLRHPPGNEIYRKGTISFFEIDGRKNKSYSQNLCLLAKCFLDHKTLYYDTDPFLFYVMTEYDCKGFHIVGYFSKEKESTEDYNVACILTLPPYQRRGYGKLLIEFSYELSKVEGKTGTPEKPLSDLGLLSYRSYWSQTILEILMGLKSESGERPQITINEISEITSIKKEDVISTLQYLNLINYYKGQYILTLSEDIVDGHERAMLKRLLRIDSKCLHFTPKDWSKR input pdb
Peptide sequence	DVDLKKFKMHLED
Simulation mc cycles	50
Peptide secondary structure psipred	CCCHHHHHHHCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	24.3298	4.4801	18.1413	109
cluster_2.pdb ( medoid)	21.6815	5.90366	26.4052	128
cluster_3.pdb ( medoid)	18.0057	3.60997	22.2208	65
cluster_4.pdb ( medoid)	17.6659	4.92475	9.28544	87
cluster_5.pdb ( medoid)	17.3644	5.18301	19.8803	90
cluster_6.pdb ( medoid)	17.1196	6.13331	22.6097	105
cluster_7.pdb ( medoid)	12.9324	10.1296	34.2532	131
cluster_8.pdb ( medoid)	12.3875	12.5126	30.7098	155
cluster_9.pdb ( medoid)	10.5322	7.02606	17.4364	74
cluster_10.pdb ( medoid)	5.41429	10.343	29.08	56