CABS-dock: leptonychotes

Project name: leptonychotes

Status: done

submitted: 2026-03-12 09:24:00, status changed: 2026-03-12 21:26:45

Project settings

Protein sequence(s)	GEVASVPLTNYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSSTFQNLGKPLSIHYGTGSMQGILGYDTVTVSNIVDIQQTVGLSTQEPGDVFTYAEFDGILGMAYPSLASEYSIPVFDNMMNRHLVAQDLFSVYMDRNGQESMLTLGAINPSYYTGSLHWVPVTVQQYWQFTVDSVTISGVVVACEGGCQAILDTGTSKLVGPSSDILNIQQAIGATQNQYGEFDIDCDNLSYMPTVVFEINGKMYPLTPSAYTSQDQGFCTSGFQSENHSQKWILGDVFIREYYSVFDRANNLVGLAKAI input pdb
Peptide sequence	VHRPHLHPSFTAIPAKKIQDKTGI
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCHHHHCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	34.885	3.23921	18.8752	113
cluster_2.pdb ( medoid)	29.1912	5.17279	17.424	151
cluster_3.pdb ( medoid)	22.5438	5.85526	19.7802	132
cluster_4.pdb ( medoid)	12.5365	5.98253	27.0264	75
cluster_5.pdb ( medoid)	10.2681	10.0311	31.2145	103
cluster_6.pdb ( medoid)	8.11586	13.8001	36.806	112
cluster_7.pdb ( medoid)	7.70889	14.6584	39.2034	113
cluster_8.pdb ( medoid)	7.69065	7.54163	31.4471	58
cluster_9.pdb ( medoid)	6.26884	18.5042	53.028	116
cluster_10.pdb ( medoid)	5.44371	4.95985	8.80511	27