CABS-dock: FFYNY

Project name: FFYNY

Status: done

submitted: 2025-07-02 09:10:02, status changed: 2025-07-02 13:24:48

Project settings

Protein sequence(s)	EYPTVSEIPVGEVRLYQIADGVWSHIATQSFDGAVYPSNGLIVRDGDELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLRAAGVATYASPSTRRLAEVEGNEIPTHSLEGLSSSGDAVRFGPVELFYPGAAHSTDNLVVYVPSASVLYGGCAIYELSRTSAGNVADADLAEWPTSIERIQQHYPEAQFVIPGHGLPGGLDLLKHTTNVVKAHTN input pdb
Peptide sequence	FFYNY
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	31.3699	4.81353	11.6376	151
cluster_2.pdb ( medoid)	21.1491	8.27458	34.692	175
cluster_3.pdb ( medoid)	15.7905	6.58623	16.1269	104
cluster_4.pdb ( medoid)	13.3081	8.49109	25.7063	113
cluster_5.pdb ( medoid)	11.9163	7.63661	17.1745	91
cluster_6.pdb ( medoid)	11.6125	8.69756	23.8486	101
cluster_7.pdb ( medoid)	10.1744	10.0251	35.1457	102
cluster_8.pdb ( medoid)	9.35874	5.1289	16.6115	48
cluster_9.pdb ( medoid)	7.96714	10.4178	28.9159	83
cluster_10.pdb ( medoid)	2.86377	11.1741	29.0788	32