CABS-dock: 1M17-GLPFHP

Project name: 1M17-GLPFHP

Status: done

submitted: 2025-08-25 08:40:29, status changed: 2025-08-25 14:21:42

Project settings

Protein sequence(s)	GEAPNQALLRILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARDPQRYLVIQGDERMHLMDEEDMDDVVDADEYLIP input pdb
Peptide sequence	GLPFHP
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	27.4009	5.58376	28.7531	153
cluster_2.pdb ( medoid)	16.7602	7.81615	22.9402	131
cluster_3.pdb ( medoid)	15.9827	8.38408	35.2547	134
cluster_4.pdb ( medoid)	14.9938	9.73736	44.9879	146
cluster_5.pdb ( medoid)	13.3054	7.96667	24.1761	106
cluster_6.pdb ( medoid)	10.6678	11.0614	35.6034	118
cluster_7.pdb ( medoid)	9.30339	7.95409	27.7128	74
cluster_8.pdb ( medoid)	5.89706	14.9227	38.3902	88
cluster_9.pdb ( medoid)	3.30354	10.8974	38.9389	36
cluster_10.pdb ( medoid)	1.24305	11.2626	19.9595	14