CABS-dock: Test

Project name: Test_axl

Status: done

submitted: 2025-08-24 12:36:53, status changed: 2025-08-24 20:17:28

Project settings

Protein sequence(s)	ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRSLHVPGLNKTSSFSCEAHNAKGVTTSRTATITVLESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRSLHVPGLNKTSSFSCEAHNAKGVTTSRTATITVL input pdb
Peptide sequence	LKKWWKKVKGLLGGLLGKVTSVIK
Simulation mc cycles	50
Peptide secondary structure psipred	CHHHHHHHHHHHHHHHHHHHHHCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	25.5697	9.30789	35.973	238
cluster_2.pdb ( medoid)	24.8246	4.39081	25.5829	109
cluster_3.pdb ( medoid)	7.66924	13.1695	35.761	101
cluster_4.pdb ( medoid)	7.54288	18.1628	45.1944	137
cluster_5.pdb ( medoid)	6.11589	13.0807	43.1564	80
cluster_6.pdb ( medoid)	5.70927	18.9166	58.6276	108
cluster_7.pdb ( medoid)	3.24596	17.8684	40.2622	58
cluster_8.pdb ( medoid)	3.04857	24.2737	46.4517	74
cluster_9.pdb ( medoid)	2.62141	16.0219	34.4597	42
cluster_10.pdb ( medoid)	1.31701	14.4266	35.4388	19