CABS-dock: 59e2b598aa04367

Project name: 59e2b598aa04367

Status: done

submitted: 2025-04-22 12:18:56, status changed: 2025-04-22 18:25:44

Project settings

Protein sequence(s)	QPDPMPDDLHKSSEFTGTMGNMKYLYDDHYVSATKVKSVDSFFKWDLIYNISDKKLKNYDKVKTELLNEDLAKKYKDEVVDVYGSNYYVNCYFSSKGGKTCMYGGITKHEGNHFDNGNLQNVLVRVYENKRNTISFEVQTDKKSVTAQELDIKARNFLINKKNLYEFNSSPYETGYIKFIENNGNTFWYDMMPAPGDKFDQSKYLMMYNDNKTVDSKSVKIEVHLTTK input pdb
Peptide sequence	MRFNNDGTLASLNGG
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	25.342	3.98548	10.9126	101
cluster_2.pdb ( medoid)	24.9825	4.32302	28.3701	108
cluster_3.pdb ( medoid)	20.2117	6.62981	35.5325	134
cluster_4.pdb ( medoid)	16.9028	9.87999	23.4421	167
cluster_5.pdb ( medoid)	15.4643	6.46652	16.5435	100
cluster_6.pdb ( medoid)	10.7076	8.40527	35.5563	90
cluster_7.pdb ( medoid)	9.70021	12.2678	30.3328	119
cluster_8.pdb ( medoid)	6.30097	14.1248	33.1568	89
cluster_9.pdb ( medoid)	4.85116	15.4602	39.128	75
cluster_10.pdb ( medoid)	4.43512	3.83305	10.2506	17