CABS-dock: 5acd00d345a40a8

Project name: 5acd00d345a40a8

Status: done

submitted: 2026-06-23 08:48:41, status changed: 2026-06-23 11:13:03

Project settings

Protein sequence(s)	MVLSDKTPGSASYRISDNNFVQCGSNCTMIIDGDVVRGRPQDPGAAASPAMVLSDKTPGSASYRISDNNFVQCGSNCTMIIDGDVVRGRPQDPGAAASPA input pdb
Peptide sequence	VQLFGYHHHHHHHHHHH
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	34.8911	3.35329	9.84335	117
cluster_2.pdb ( medoid)	34.6715	6.95095	23.9252	241
cluster_3.pdb ( medoid)	23.8902	2.80449	11.0838	67
cluster_4.pdb ( medoid)	21.3049	9.62218	33.3537	205
cluster_5.pdb ( medoid)	12.0551	5.7237	10.6214	69
cluster_6.pdb ( medoid)	10.8591	5.70948	13.097	62
cluster_7.pdb ( medoid)	9.13549	4.26907	10.3076	39
cluster_8.pdb ( medoid)	7.75386	10.8333	29.5914	84
cluster_9.pdb ( medoid)	7.23479	8.5697	22.4687	62
cluster_10.pdb ( medoid)	3.36096	16.0669	28.0119	54