CABS-dock: 5ad5e65a1cbc402

Project name: 5ad5e65a1cbc402

Status: done

submitted: 2026-04-04 10:12:10, status changed: 2026-04-04 13:58:44

Project settings

Protein sequence(s)	GDQRFGDLVFRQLAPNVWQHTSYLDMPGFGAVASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMVAAQHSLTGWVEPATAPNFGPLKVFYPGPGHTSDNITVGIDGTDIAFGGCLIKDSKAKSLGNLGDADYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMADKLR input pdb
Peptide sequence	QNCASCLG
Simulation mc cycles	50
Peptide secondary structure psipred	CCCHHCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	33.9101	9.11234	43.937	309
cluster_2.pdb ( medoid)	28.5108	4.59475	20.2282	131
cluster_3.pdb ( medoid)	20.6241	4.50929	19.0766	93
cluster_4.pdb ( medoid)	16.1545	6.12831	24.5185	99
cluster_5.pdb ( medoid)	10.7093	10.7384	28.0723	115
cluster_6.pdb ( medoid)	4.0814	15.4359	42.7155	63
cluster_7.pdb ( medoid)	3.66757	19.3589	39.9482	71
cluster_8.pdb ( medoid)	3.58906	16.1602	38.329	58
cluster_9.pdb ( medoid)	1.94753	15.4041	33.2592	30
cluster_10.pdb ( medoid)	1.81985	17.0344	35.1853	31