CABS-dock: 5b923abb30914c0

Project name: 5b923abb30914c0

Status: done

submitted: 2026-01-14 16:46:15, status changed: 2026-01-15 03:39:40

Project settings

Protein sequence(s)	QIIPSNTTSPPTNSTSPPTNATAPAPSPTNTITKAANITKPGCPKQCGNVTVPYPFGIGSGCALDPMFEIDCNVTTPFIGNIQIYDISDAEMRISNFINTKCYSQTGVLIQDIPSWITLGTKSPYTFSTLNRFIVVGCDDGAIVSGNNFANGCPSLCTSTNDIVKGKCMGFGCCQITIPKGLKFFNTTMVTTRNHSLIWSFNPCGHSFLGEASRFEFQGIEDLSDVNFANKIRNNVPIVLDWAIGNLSCVEARKSNDYACLNNSQCVDSDTSLGGYRCSCNSGYIGNPYIGSGCQDIDECADPNTNSCEKICTNIPGSYNCSCPEGYTGDGRKNGRGCIAPNSNSEFPWIK input pdb
Peptide sequence	VDGFKATDFGTLVRTNGGKQFDDMS
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCEEECCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	96.0647	1.04096	2.12921	100
cluster_2.pdb ( medoid)	28.8812	3.49708	12.6653	101
cluster_3.pdb ( medoid)	19.6066	6.06937	12.9872	119
cluster_4.pdb ( medoid)	16.1272	6.13868	12.6208	99
cluster_5.pdb ( medoid)	11.2706	9.22753	26.0912	104
cluster_6.pdb ( medoid)	6.3464	12.1329	26.4353	77
cluster_7.pdb ( medoid)	4.88071	13.5226	28.6326	66
cluster_8.pdb ( medoid)	3.80195	8.94277	15.258	34
cluster_9.pdb ( medoid)	3.13725	16.5751	31.2814	52
cluster_10.pdb ( medoid)	2.11725	22.671	43.6951	48