CABS-dock: d3

Project name: d3_36

Status: done

submitted: 2026-06-03 08:38:16, status changed: 2026-06-03 14:44:11

Project settings

Protein sequence(s)	SLELQEHCSLKPYNTFGIDVRARLLAHARDEADVREALALARERGLPLLVIGGGSNLLLTRDVEALVLRMASQGRRIVSDAADSVLVEAEAGEAWDPFVQWSLERGLAGLENLSLIPGTVGAAPMQNIGAYGVELKDVFDSLTALDRQDGTLREFDRQACRFGYRDSLFKQEPDRWLILRVRLRLTRRERLHLDYGPVRQRLEEEGIASPTARDVSRVICAIRREKLPDPAVLGNAGSFFKNPLVDATQAERLRQAFPDLVGYPQADGRLKLAAGWLIDKGGWKGFRDGPVGVHAQQALVLVNHGGATGAQVRALAERIQEDVRRRFGVELEPEPNLY input pdb
Peptide sequence	QMVPYPQRAMPV
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	28.3767	3.13638	26.7389	89
cluster_2.pdb ( medoid)	26.9476	4.56442	14.7647	123
cluster_3.pdb ( medoid)	24.6379	3.12527	12.1379	77
cluster_4.pdb ( medoid)	22.8698	7.6083	19.1229	174
cluster_5.pdb ( medoid)	17.9276	5.18754	13.6367	93
cluster_6.pdb ( medoid)	16.195	6.66872	17.9105	108
cluster_7.pdb ( medoid)	9.00956	13.3192	34.1386	120
cluster_8.pdb ( medoid)	6.1168	10.6265	46.4841	65
cluster_9.pdb ( medoid)	5.89938	13.0522	40.9038	77
cluster_10.pdb ( medoid)	4.15591	17.806	47.7072	74