CABS-dock: 5c8d9a82e288415

Project name: 5c8d9a82e288415

Status: done

submitted: 2026-06-02 13:38:38, status changed: 2026-06-02 21:57:28

Project settings

Protein sequence(s)	MAELQEVQITEEKPLLPGQTPEAAKEAELAARILLDQGQTHSVETPYGSVTFTVYGTPKPKRPAILTYHDVGLNYKSCFQPLFQFEDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCVLQYLNFSTIIGVGVGAGAYILARYALNHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSIPEMILGHLFSQEELSGNSELIQKYRNIITHAPNLDNIELYWNSYNNRRDLNFERGGDITLRCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFKYFLQGMGYMASSCMTRLSRSRTASLTSAASVDGNRSRSRTLSQSSESGTLSSGPPGHTMEVSC input pdb
Peptide sequence	LSEEAWKKLRELSEKI
Simulation mc cycles	50
Peptide secondary structure psipred	CCHHHHHHHHHHHHHC

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	72.406	0.759606	2.25995	55
cluster_2.pdb ( medoid)	28.721	3.82996	20.6775	110
cluster_3.pdb ( medoid)	28.6001	3.56642	18.5496	102
cluster_4.pdb ( medoid)	25.5451	4.77587	26.1554	122
cluster_5.pdb ( medoid)	18.2961	9.0183	42.7003	165
cluster_6.pdb ( medoid)	17.0151	6.52361	32.7445	111
cluster_7.pdb ( medoid)	15.8988	16.4164	41.981	261
cluster_8.pdb ( medoid)	9.08075	3.19357	11.3348	29
cluster_9.pdb ( medoid)	6.21117	4.02501	12.8209	25
cluster_10.pdb ( medoid)	1.5813	12.6478	26.0751	20