CABS-dock: 5d1b31ab025422d

Project name: 5d1b31ab025422d

Status: done

submitted: 2026-01-21 16:25:07, status changed: 2026-01-21 20:10:18

Project settings

Protein sequence(s)	AMHVAQPAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFDSICTGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPPPYYLGIGNGTQIYVI input pdb
Peptide sequence	TGWLGPFDY
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	30.5594	5.4975	11.8636	168
cluster_2.pdb ( medoid)	27.4694	3.93164	13.4364	108
cluster_3.pdb ( medoid)	24.9633	3.64535	8.84032	91
cluster_4.pdb ( medoid)	15.8655	6.05085	13.646	96
cluster_5.pdb ( medoid)	14.8128	7.29101	29.8948	108
cluster_6.pdb ( medoid)	12.6335	7.2031	31.6577	91
cluster_7.pdb ( medoid)	9.73481	13.5596	36.3719	132
cluster_8.pdb ( medoid)	9.36272	8.2241	30.7188	77
cluster_9.pdb ( medoid)	7.55904	8.73127	20.909	66
cluster_10.pdb ( medoid)	6.54545	9.625	29.5533	63