CABS-dock: Ta mère

Project name: Ta mère

Status: done

submitted: 2025-04-14 09:11:44, status changed: 2025-04-14 15:07:54

Project settings

Protein sequence(s)	CSAHELSCAGACIPATYWCDGYQDCSDNSDEKNCGTVTCPANGFRCGNGKCVENAWLCDGYNDCGDHSDEINCTRRNCSSEEYQCRANYCIPVYWRCDGEKDCPDNDDEGNCSLVECPSGYDRCRDGQCFSRDWRCDGQADCKDSSDELDCGATTGCLPEDFRCTNKECIDPRFRCDRRVDCEDGSDENGCDSSYTANTTSQCPRGMVNCGDGQCIYEHDICDGYVDCHLGQDERNCTSAMCSSKEVFCINTKRCILEAWLCDGEDDCGDNMDETLPRCHPTTTPSTTTTEAACWSDEFRCGSHECVPWSRVCDRHLDCMDASDE input pdb
Peptide sequence	CKKTRP
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	50.0892	3.15437	13.3739	158
cluster_2.pdb ( medoid)	19.6623	7.3745	15.7292	145
cluster_3.pdb ( medoid)	19.1697	7.35537	20.5463	141
cluster_4.pdb ( medoid)	18.7453	6.29492	22.9329	118
cluster_5.pdb ( medoid)	17.243	3.47968	21.1994	60
cluster_6.pdb ( medoid)	13.7514	5.74486	14.1355	79
cluster_7.pdb ( medoid)	12.7995	11.8755	35.8654	152
cluster_8.pdb ( medoid)	6.81141	5.43206	20.6985	37
cluster_9.pdb ( medoid)	5.67594	11.8042	27.2905	67
cluster_10.pdb ( medoid)	5.3547	8.03033	18.1981	43