CABS-dock: 5e6aeb68cc9b3b6

Project name: 5e6aeb68cc9b3b6

Status: done

submitted: 2026-01-12 17:34:51, status changed: 2026-01-13 07:27:56

Project settings

Protein sequence(s)	QIIPSNTTSPPTNSTSPPTNATAPAPSPTNTITKAANITKPGCPKQCGNVTVPYPFGIGSGCALDPMFEIDCNVTTPFIGNIQIYDISDAEMRISNFINTKCYSQTGVLIQDIPSWITLGTKSPYTFSTLNRFIVVGCDDGAIVSGNNFANGCPSLCTSTNDIVKGKCMGFGCCQITIPKGLKFFNTTMVTTRNHSLIWSFNPCGHSFLGEASRFEFQGIEDLSDVNFANKIRNNVPIVLDWAIGNLSCVEARKSNDYACLNNSQCVDSDTSLGGYRCSCNSGYIGNPYIGSGCQDIDECADPNTNSCEKICTNIPGSYNCSCPEGYTGDGRKNGRGCIAPNSNSEFPWIK input pdb
Peptide sequence	PQITPQLANPNRTSGTGSVSDTAGS
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	36.3003	3.03028	17.8086	110
cluster_2.pdb ( medoid)	17.1567	9.20922	32.3393	158
cluster_3.pdb ( medoid)	14.952	8.36009	28.3109	125
cluster_4.pdb ( medoid)	13.9313	8.18303	18.9349	114
cluster_5.pdb ( medoid)	9.96883	6.82126	25.9001	68
cluster_6.pdb ( medoid)	7.22799	14.8036	33.9393	107
cluster_7.pdb ( medoid)	6.65761	11.5657	28.6661	77
cluster_8.pdb ( medoid)	5.7074	7.70929	16.8337	44
cluster_9.pdb ( medoid)	5.24582	10.2939	25.7719	54
cluster_10.pdb ( medoid)	5.00851	8.5854	19.9777	43