CABS-dock: 5ea67b9be285afb

Project name: 5ea67b9be285afb

Status: done

submitted: 2026-01-23 12:03:06, status changed: 2026-01-23 18:10:07

Project settings

Protein sequence(s)	ITKAANITKPGCPKQCGNVTVPYPFGIGSGCALDPMFEIDCNVTTPFIGNIQIYDISDAEMRISNFINTKCYSQTGVLIQDIPSWITLGTKSPYTFSTLNRFIVVGCDDGAIVSGNNFANGCPSLCTSTNDIVKGKCMGFGCCQITIPKGLKFFNTTMVTTRNHSLIWSFNPCGHSFLGEASRFEFQGIEDLSDVNFANKIRNNVPIVLDWAIGNLSCVEARKSNDYACLNNSQCVDSDTSLGGYRCSCNSGYIGNPYIGSGCQDIDECADPNTNSCEKICTNIPGSYNCSCPEGYTGDGRKNGRGCIAPN input pdb
Peptide sequence	NLNIKNSSAKGADDKVVQLNANTHL
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCCEEEECCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	16.1278	7.6266	21.4743	123
cluster_2.pdb ( medoid)	15.3423	8.73404	39.2295	134
cluster_3.pdb ( medoid)	13.318	10.7373	27.7863	143
cluster_4.pdb ( medoid)	12.6767	6.62634	12.0739	84
cluster_5.pdb ( medoid)	8.0524	8.44469	21.7076	68
cluster_6.pdb ( medoid)	6.97658	7.45351	22.5649	52
cluster_7.pdb ( medoid)	6.08527	10.3529	29.1681	63
cluster_8.pdb ( medoid)	3.63623	17.6007	50.4835	64
cluster_9.pdb ( medoid)	3.2965	19.4145	40.21	64
cluster_10.pdb ( medoid)	3.27681	24.7192	47.0926	81