CABS-dock: 5f6e87ab818f88

Project name: 5f6e87ab818f88

Status: done

submitted: 2025-12-29 10:15:48, status changed: 2025-12-29 14:05:58

Project settings

Protein sequence(s)	MVLSDKTPGSASYRISDNNFVQCGSNCTMIIDGDVVRGRPQDPGAAASPARRVIVFVQCGSNCRMVLSDKTPGSASYRISDNNFVQCGSNCTMIIDGDVVRGRPQDPGAAASPA input pdb
Peptide sequence	NPVTGRPLVNIYNCSGVQVGDNNYLTMQQT
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCEEEEECCCCCEECCCCEEEEECC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	20.7365	2.02542	15.6699	42
cluster_2.pdb ( medoid)	17.8984	7.43083	33.2395	133
cluster_3.pdb ( medoid)	14.8162	9.51659	29.2959	141
cluster_4.pdb ( medoid)	10.3632	10.4215	31.7157	108
cluster_5.pdb ( medoid)	10.1162	17.3978	36.4387	176
cluster_6.pdb ( medoid)	7.78496	10.5331	26.6646	82
cluster_7.pdb ( medoid)	7.75788	13.1479	30.8048	102
cluster_8.pdb ( medoid)	7.19972	15.8339	31.7931	114
cluster_9.pdb ( medoid)	5.10027	3.92136	24.1515	20
cluster_10.pdb ( medoid)	4.78144	17.1496	31.2302	82