CABS-dock: 3FV7 200

Project name: 3FV7 200

Status: done

submitted: 2025-11-12 18:59:50, status changed: 2025-11-13 21:52:58

Project settings

Protein sequence(s)	HISSQQHEKAIKSYFDEAQTQGVIIIKEGKNLSTYGNALARANKEYVPASTFMLNALIGLENHKATTNEIFKWDGKKRTYPMWEKDMTLGEAMALSAVPVYQELARRTGLELMQKEVKRVNFGNTNIGTQVDNFWLVGPLKITPVQEVNFADDLAHNRLPFKLETQEEVKKMLLIKEVNGSKIYAKSGWGMGVTPQVGWLTGWVEQANGKKIPFSLNLEMKEGMSGSIRNEITYKSLENLGII input pdb
Peptide sequence	KDSMEEY
Simulation mc cycles	200
Peptide secondary structure psipred	CCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	86.0775	2.14923	5.17869	185
cluster_2.pdb ( medoid)	37.9669	2.42317	12.1232	92
cluster_3.pdb ( medoid)	24.472	7.80483	41.5424	191
cluster_4.pdb ( medoid)	18.7638	3.51741	9.05403	66
cluster_5.pdb ( medoid)	15.2268	4.79416	14.374	73
cluster_6.pdb ( medoid)	14.0133	7.42154	41.5613	104
cluster_7.pdb ( medoid)	13.1122	8.54167	23.4247	112
cluster_8.pdb ( medoid)	12.4008	6.28992	13.0512	78
cluster_9.pdb ( medoid)	4.35731	15.8355	46.3982	69
cluster_10.pdb ( medoid)	2.41261	12.4347	35.3913	30