CABS-dock: 61977aaf16c0ba5

Project name: 61977aaf16c0ba5

Status: done

submitted: 2026-01-11 16:13:44, status changed: 2026-01-11 19:46:07

Project settings

Protein sequence(s)	MVLSDKTPGSASYRISDNNFVQCGSNCTMIIDGDVVRGRPQDPGAAASPALPPTDESIKYTIYNSTGIQIGAYNYMEIGGMVLSDKTPGSASYRISDNNFVQCGSNCTMIIDGDVVRGRPQDPGAAASPA input pdb
Peptide sequence	RVIVQVGSNCFR
Simulation mc cycles	50
Peptide secondary structure psipred	CEEEEECCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	97.8731	1.02173	2.08783	100
cluster_2.pdb ( medoid)	18.4135	6.73418	21.0522	124
cluster_3.pdb ( medoid)	15.2141	9.07051	32.9872	138
cluster_4.pdb ( medoid)	13.4597	8.69262	38.742	117
cluster_5.pdb ( medoid)	12.0236	5.8219	34.0852	70
cluster_6.pdb ( medoid)	11.7686	3.39887	10.777	40
cluster_7.pdb ( medoid)	11.2191	10.8743	27.0871	122
cluster_8.pdb ( medoid)	7.32157	13.3851	28.6193	98
cluster_9.pdb ( medoid)	6.61595	14.8127	33.2387	98
cluster_10.pdb ( medoid)	6.02186	15.4437	36.0897	93