CABS-dock: Fc-nature-19

Project name: Fc-nature-19

Status: done

submitted: 2026-05-08 07:25:47, status changed: 2026-05-08 11:30:59

Project settings

Protein sequence(s)	HMVHITLDPDTANPWLILSEDRRQVRLGDTQQSIPGNEERFDSYPMVLGAQHFHSGKHYWEVDVTGKEAWDLGVCRDSVRRKGHFLLSSKSGFWTIWLWNKQKYEAGTYPQTPLHLQVPPCQVGIFLDYEAGMVSFYNITDHGSLIYSFSECAFTGPLRPFFSPGFNDGGKNTAPLTLCPL input pdb
Peptide sequence	EALHNH
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	37.3142	5.27949	32.2799	197
cluster_2.pdb ( medoid)	36.1291	3.29374	22.5621	119
cluster_3.pdb ( medoid)	18.2018	6.20817	28.9787	113
cluster_4.pdb ( medoid)	17.6449	5.89407	31.9119	104
cluster_5.pdb ( medoid)	13.4453	11.0819	41.343	149
cluster_6.pdb ( medoid)	12.2882	5.28962	26.4949	65
cluster_7.pdb ( medoid)	6.94721	7.34107	42.9664	51
cluster_8.pdb ( medoid)	6.93941	12.1048	42.4195	84
cluster_9.pdb ( medoid)	6.28524	11.7736	31.9703	74
cluster_10.pdb ( medoid)	4.10844	10.7097	30.3286	44