CABS-dock: 628addb00447241

Project name: 628addb00447241

Status: done

submitted: 2026-01-21 16:26:28, status changed: 2026-01-21 19:47:49

Project settings

Protein sequence(s)	AMHVAQPAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFDSICTGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPPPYYLGIGNGTQIYVI input pdb
Peptide sequence	GFTFSSYTMH
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCEECC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	48.6037	3.33308	11.1664	162
cluster_2.pdb ( medoid)	43.6694	3.04561	15.6475	133
cluster_3.pdb ( medoid)	23.1784	6.25582	22.6284	145
cluster_4.pdb ( medoid)	16.3905	3.9047	9.28538	64
cluster_5.pdb ( medoid)	9.50315	9.26009	27.7888	88
cluster_6.pdb ( medoid)	8.90812	12.5728	31.1347	112
cluster_7.pdb ( medoid)	8.63439	13.5505	41.1389	117
cluster_8.pdb ( medoid)	5.68214	12.4953	36.5812	71
cluster_9.pdb ( medoid)	5.02483	7.76145	29.1579	39
cluster_10.pdb ( medoid)	4.21241	16.3802	31.4352	69