CABS-dock: 632ee52b721c504

Project name: 632ee52b721c504

Status: done

submitted: 2026-03-18 17:06:23, status changed: 2026-03-19 04:06:07

Project settings

Protein sequence(s)	VLHSLHYFYTGSSGLTTFPEFVAVGMVDGVQIDYYDSITQKKVLKQDWMERYTIREDPNYLERGTGVRKAHQQAFKANIGIAKQRFNQTGGAHINQFMYGCEWDDEDGSTDGYDQHGYDGEDFLSLDLEHLTWVAPVRQAFATKRKWDENKAQLQYKKNYYTKECVDWLKKYLVYGKSTLQRKERPRVSLLQRSPSSPVVCHATGFYPDRVVVFWRRDGRELHEQVDPGEVLPNHDGTFQVSVDLDLTAVPQEDWGRYECVVQLRGIEDISTPLDPALIRTNMAITPPKVQVYTREPAEPGTGNSLICYLNNFQPPEVEVDLLENGVVIPGAVQSDLMFESQWQYHLTKRVPFIPREGARYACRVNHMGRTTNHAWDMN input pdb
Peptide sequence	KIADNNGTV
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	25.5048	6.03807	23.0021	154
cluster_2.pdb ( medoid)	25.2679	5.14487	30.4653	130
cluster_3.pdb ( medoid)	19.8108	5.65348	11.1288	112
cluster_4.pdb ( medoid)	14.8234	10.1866	38.396	151
cluster_5.pdb ( medoid)	14.4588	6.84702	22.1679	99
cluster_6.pdb ( medoid)	10.7199	10.4479	35.9953	112
cluster_7.pdb ( medoid)	10.5963	11.3247	56.8133	120
cluster_8.pdb ( medoid)	6.91241	8.24604	34.0659	57
cluster_9.pdb ( medoid)	3.01926	12.2546	42.7413	37
cluster_10.pdb ( medoid)	2.06404	13.5656	34.7882	28