CABS-dock: 63596086064365d

Project name: 63596086064365d

Status: done

submitted: 2026-02-19 23:42:53, status changed: 2026-02-20 04:39:06

Project settings

Protein sequence(s)	VLLLDVTPLSLGIETMMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQQH input pdb
Peptide sequence	PPQGRPYFKPTPFPGARGGK
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	31.4945	3.71493	20.6852	117
cluster_2.pdb ( medoid)	18.2568	8.32564	39.3858	152
cluster_3.pdb ( medoid)	18.1008	5.41412	19.127	98
cluster_4.pdb ( medoid)	16.2025	7.1594	38.47	116
cluster_5.pdb ( medoid)	12.9322	5.56751	13.1294	72
cluster_6.pdb ( medoid)	10.1905	14.5233	44.6215	148
cluster_7.pdb ( medoid)	7.13064	14.4447	53.504	103
cluster_8.pdb ( medoid)	7.09171	12.2678	47.3975	87
cluster_9.pdb ( medoid)	6.44026	9.00585	40.4967	58
cluster_10.pdb ( medoid)	2.08004	23.5573	49.2061	49