CABS-dock: cpca02

Project name: cpca02

Status: done

submitted: 2026-06-24 06:05:43, status changed: 2026-06-24 13:01:23

Project settings

Protein sequence(s)	WRYGGDPPWPRVSPACAGRFQSPVDIRPQLAAFSPALRPLELLGFQLPPLPELRLRNNGHSVQLTLPPGLEMALGPGREYRALQLHLHWGAAGRPGSEHTVEGHRFPAEIHVVHLSTAFARVDEALGRPGGLAVLAAFLEEGPEENSAYEQLLSRLEEIAEEGSETQVPGLDISALLPSDFSRYFQYEGSLTTPPCAQGVIWTVFNQTVMLSAKQLHTLSDDTLWGPGDSRLQLNFRATQPLNGRVIEASFP input pdb
Peptide sequence	LVGPGGKATLGG
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	44.6927	4.67637	35.6992	209
cluster_2.pdb ( medoid)	41.3587	2.9498	30.7278	122
cluster_3.pdb ( medoid)	31.6365	3.41377	28.6534	108
cluster_4.pdb ( medoid)	24.5329	6.39958	31.2264	157
cluster_5.pdb ( medoid)	19.8077	5.2	25.0777	103
cluster_6.pdb ( medoid)	17.0724	4.04161	10.1485	69
cluster_7.pdb ( medoid)	10.4855	4.10091	12.0941	43
cluster_8.pdb ( medoid)	7.48992	14.5529	39.1838	109
cluster_9.pdb ( medoid)	7.36992	5.83453	32.7574	43
cluster_10.pdb ( medoid)	2.11703	17.4773	34.7215	37