CABS-dock: Aiy

Project name: Aiy_4

Status: done

submitted: 2025-12-15 06:45:08, status changed: 2025-12-15 09:50:00

Project settings

Protein sequence(s)	QKQYWVCNSSDASISYTYCDKMQYPISINVNPCIELKGSKGLLHIFYIPRRDLKQLYFNLYITVNTMNLPKRKEVICRGSDDDYSFCRALKGETVNTTISFSFKGIKFSKGKYKCVVEAISGSPEEMLFCLEFVILHQPN input pdb
Peptide sequence	SYLYVVGR
Simulation mc cycles	50
Peptide secondary structure psipred	CCEEEECC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	109.517	2.80321	36.0958	307
cluster_2.pdb ( medoid)	53.5347	2.70852	20.9979	145
cluster_3.pdb ( medoid)	45.222	2.10075	5.36836	95
cluster_4.pdb ( medoid)	43.9828	2.66013	28.2658	117
cluster_5.pdb ( medoid)	25.1579	3.02092	27.5508	76
cluster_6.pdb ( medoid)	12.0302	6.89929	36.3064	83
cluster_7.pdb ( medoid)	4.49707	15.788	37.6749	71
cluster_8.pdb ( medoid)	3.46993	11.5276	23.4692	40
cluster_9.pdb ( medoid)	2.01451	19.3596	41.0958	39
cluster_10.pdb ( medoid)	1.65438	16.3203	33.837	27