CABS-dock: 6412d282b979bee

Project name: 6412d282b979bee

Status: done

submitted: 2026-01-16 17:48:38, status changed: 2026-01-17 03:43:41

Project settings

Protein sequence(s)	QIITIPPPPNTKPPPTNTNPPPTNTTPPPTNTTIPTNTITKAANITKPGCPKQCGNLTVPYPFGIGLRSGCAIEPNFEISCVTNATGSQTPLIGNIQVYDISDAEMRISSTLNRRCYSSTGVLLQDDPAWMNLGSSNPYSFSSLNRFIVVGCDEAAVIAGRDFANGCPTVCMSSSQVIEGRCMGAGCCQIPIPKGLKYFNTSMQSSKLNHTAVWSFNRCGYAFLGEASKFEFKGLQDLGDLNFVEKIMDNVPIVVDWAIGNLSCVEAQKRSDYACLKNSRCVDSDTGLGGYRCNCNSGYQGNPYIGPGCQDVDECADPNANSCEQICINTPGSYNCSCPEGYTGDGRKNGRGCNAPSSNSEFPWIK input pdb
Peptide sequence	GENQKPMFELAEGATLKNVNLGENE
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCEEECCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	84.3195	1.18597	2.34756	100
cluster_2.pdb ( medoid)	28.0987	6.22805	18.7826	175
cluster_3.pdb ( medoid)	20.8018	4.66307	13.2386	97
cluster_4.pdb ( medoid)	18.1434	2.48024	7.7201	45
cluster_5.pdb ( medoid)	13.2016	1.51497	2.55483	20
cluster_6.pdb ( medoid)	12.3878	1.69521	3.06634	21
cluster_7.pdb ( medoid)	9.61253	1.56046	3.65364	15
cluster_8.pdb ( medoid)	6.15151	6.99016	14.1374	43
cluster_9.pdb ( medoid)	4.38057	17.8059	50.5936	78
cluster_10.pdb ( medoid)	1.53955	12.3412	22.9571	19