CABS-dock: 651bdf73838b1d5

Project name: 651bdf73838b1d5

Status: done

submitted: 2026-02-12 22:45:14, status changed: 2026-02-13 12:07:59

Project settings

Protein sequence(s)	TVSLWETVQKWREYRRQCQRSLTEDPPPATDLFCNRTFDEYACWPDGEPGSFVNVSCPWYLPWASSVPQGHVYRFCTAEGLWLQKDNSSLPWRDLSECEESSPEEQLLFLYIIYTVGYALSFSALVIASAILLGFRHLHCTRNYIHLNLFASFILRALCVFFKDAALKWMYSTAAQQHQWDGLLSYQDSLACRLVFLLCQYCVAANYYWLLVEGVYLYTLLAFMKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGVGKDQFEEVEEEQWIFRLYVAIGWGVPLLFVVPWGIVKYLYEDEGCWTRNSNMNYWLIIRLPILFACIVNFLIFVRVICIVVSKLKANLMCKTDIAFRLAKSTLTLIPLLCTHEVIFAFVMDEHARGTLRFIKLFTDLSFTSFQGLMVAILYCFVNNEVQLEFRKSWERWR input pdb
Peptide sequence	YRAPQYQMYDDVQFV
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCC

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	41.3775	1.69174	27.3286	70
cluster_2.pdb ( medoid)	25.9799	4.19556	16.0346	109
cluster_3.pdb ( medoid)	21.5005	1.44183	2.42055	31
cluster_4.pdb ( medoid)	21.0872	11.7607	50.2733	248
cluster_5.pdb ( medoid)	16.2776	6.38917	39.6118	104
cluster_6.pdb ( medoid)	15.4962	7.87289	38.3718	122
cluster_7.pdb ( medoid)	14.0387	6.90949	25.7136	97
cluster_8.pdb ( medoid)	6.81906	11.1452	24.4638	76
cluster_9.pdb ( medoid)	5.13733	13.4311	30.4838	69
cluster_10.pdb ( medoid)	2.49711	11.213	30.5722	28