CABS-dock: SYTNSQHNNS-YW

Project name: SYTNSQHNNS-YW

Status: done

submitted: 2026-07-23 08:48:56, status changed: 2026-07-23 12:52:36

Project settings

Protein sequence(s)	GTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPS input pdb
Peptide sequence	SYTNSQHNNS
Simulation mc cycles	100
Peptide secondary structure psipred	CCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	32.5386	2.33569	13.5503	76
cluster_2.pdb ( medoid)	26.6551	6.60286	16.7224	176
cluster_3.pdb ( medoid)	25.3138	5.84661	24.7644	148
cluster_4.pdb ( medoid)	20.3558	5.35474	25.8808	109
cluster_5.pdb ( medoid)	15.6735	6.06119	17.2458	95
cluster_6.pdb ( medoid)	14.9059	5.50117	14.2759	82
cluster_7.pdb ( medoid)	13.3654	5.9108	20.371	79
cluster_8.pdb ( medoid)	10.4363	5.845	14.3171	61
cluster_9.pdb ( medoid)	8.28469	14.4845	34.3472	120
cluster_10.pdb ( medoid)	7.27773	7.4199	19.4511	54