CABS-dock: N-P08670-1

Project name: N-P08670-1

Status: done

submitted: 2025-10-10 03:21:06, status changed: 2025-10-11 09:15:04

Project settings

Protein sequence(s)	ASQIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTGGASQIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKT input pdb
Peptide sequence	VPGVRLLQ
Simulation mc cycles	150
Peptide secondary structure psipred	CCCCCCCC

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	52.6743	2.99956	25.3277	158
cluster_2.pdb ( medoid)	38.8281	2.88451	29.1281	112
cluster_3.pdb ( medoid)	25.7631	3.14403	8.60932	81
cluster_4.pdb ( medoid)	21.4654	4.14621	9.57744	89
cluster_5.pdb ( medoid)	19.1286	2.97983	12.9862	57
cluster_6.pdb ( medoid)	16.7458	11.4059	46.9413	191
cluster_7.pdb ( medoid)	13.9452	5.01963	22.9467	70
cluster_8.pdb ( medoid)	13.6893	10.1539	44.0702	139
cluster_9.pdb ( medoid)	8.63176	9.96321	29.8074	86
cluster_10.pdb ( medoid)	3.92234	4.33415	7.26039	17