CABS-dock: 68cbf4cf623b1ef

Project name: 68cbf4cf623b1ef

Status: done

submitted: 2026-02-27 07:46:00, status changed: 2026-02-27 13:47:15

Project settings

Protein sequence(s)

NIVLTQSPVSLAVSLGQRATISCRASKSVSTSGYSYMHWYQQKPGQPPRLLLYLGSNLESGVPARFSGSGSGTDFTLNIPVEEEDAATYYCQHIRELTRSFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN input pdb

Peptide sequence

CQLINTNGSWHIC

Simulation mc cycles

Peptide secondary structure psipred

CCEECCCCCEEEC

Contact information

411:SG B 423:SG B 3.8 1.0

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	26.6295	4.0181	13.8259	107
cluster_2.pdb ( medoid)	25.1	7.80875	20.1257	196
cluster_3.pdb ( medoid)	15.5373	8.10953	24.5125	126
cluster_4.pdb ( medoid)	13.9803	10.1572	31.5746	142
cluster_5.pdb ( medoid)	12.4525	6.6653	22.0867	83
cluster_6.pdb ( medoid)	11.3876	9.92304	27.3404	113
cluster_7.pdb ( medoid)	9.46835	7.39305	16.9784	70
cluster_8.pdb ( medoid)	8.86059	6.77156	18.8451	60
cluster_9.pdb ( medoid)	6.77756	10.0331	20.1662	68
cluster_10.pdb ( medoid)	2.64345	13.2403	24.7184	35