CABS-dock: 6a9a7b8de3f977f

Project name: 6a9a7b8de3f977f

Status: done

submitted: 2025-12-26 14:22:45, status changed: 2025-12-27 00:14:35

Project settings

Protein sequence(s)	VDEQPLENYLDMEYFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCSSLACTNHNRFNPEDSSTYQSTSETVSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISSSGATPVFDNIWNQGLVSQDLFSVYLSADDQSGSVVIFGGIDSSYYTGSLNWVPVTVEGYWQITVDSITMNGEAIACAEGCQAIVDTGTSLLTGPTSPIANIQSDIGASENSDGDMVVSCSAISSLPDIVFTINGVQYPVPPSAYILQSEGSCISGFQGMNLPTESGELWILGDVFIRQYFTVFDRANNQVGLAPVA input pdb
Peptide sequence	ILKLSRFCKKLI
Simulation mc cycles	50
Peptide secondary structure psipred	CCHHHHHHHHHC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	45.6604	4.90578	12.1676	224
cluster_2.pdb ( medoid)	39.8321	4.79512	23.2067	191
cluster_3.pdb ( medoid)	39.473	3.54673	30.7458	140
cluster_4.pdb ( medoid)	36.4535	2.4689	8.97297	90
cluster_5.pdb ( medoid)	18.4802	5.03242	12.2629	93
cluster_6.pdb ( medoid)	12.9969	2.76989	6.33577	36
cluster_7.pdb ( medoid)	9.68923	5.26357	10.1054	51
cluster_8.pdb ( medoid)	8.09047	7.78694	16.1706	63
cluster_9.pdb ( medoid)	5.14708	12.6285	33.9934	65
cluster_10.pdb ( medoid)	4.65295	10.1011	20.3377	47