CABS-dock: 6ab95ca9ac895a8

Project name: 6ab95ca9ac895a8

Status: done

submitted: 2026-01-14 19:08:39, status changed: 2026-01-15 06:14:04

Project settings

Protein sequence(s)	MIDLSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEIKDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFGEEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLDMKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLTTPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLDTSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHARLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATEVFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFA input pdb
Peptide sequence	EGDIPAIYRYGLEGLL
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCHHHHCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	17.9741	7.90023	37.9854	142
cluster_2.pdb ( medoid)	17.6817	5.09001	18.8143	90
cluster_3.pdb ( medoid)	15.6557	5.68484	21.3316	89
cluster_4.pdb ( medoid)	15.2279	5.31918	29.4936	81
cluster_5.pdb ( medoid)	14.4601	9.75097	29.2823	141
cluster_6.pdb ( medoid)	14.0173	5.35053	12.5326	75
cluster_7.pdb ( medoid)	10.1504	7.68444	35.8069	78
cluster_8.pdb ( medoid)	9.7056	14.5277	45.7928	141
cluster_9.pdb ( medoid)	8.06358	14.5097	34.4032	117
cluster_10.pdb ( medoid)	5.69035	8.08386	20.261	46