CABS-dock: DRAMP00879M

Project name: DRAMP00879M

Status: done

submitted: 2024-07-25 15:36:29, status changed: 2024-07-25 22:25:20

Project settings

Protein sequence(s)

SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMVLPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQ input pdb

Peptide sequence

GIPCGESCVFIPCITSVAGCSCKSKVCYRN

Simulation mc cycles

Peptide secondary structure psipred

CCCCCCCEEEEEECHHHHCCCCCCCCCCCC

Contact information

163:A 1:PEP 5.0 1.0

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	19.8374	6.45246	27.0126	128
cluster_2.pdb ( medoid)	18.7844	5.9624	25.3311	112
cluster_3.pdb ( medoid)	18.3	6.50272	18.6229	119
cluster_4.pdb ( medoid)	16.9006	14.4373	42.7791	244
cluster_5.pdb ( medoid)	15.5447	8.55595	25.2555	133
cluster_6.pdb ( medoid)	5.94392	12.1132	23.1313	72
cluster_7.pdb ( medoid)	5.49377	13.4698	34.636	74
cluster_8.pdb ( medoid)	3.50778	14.254	36.8715	50
cluster_9.pdb ( medoid)	2.94003	13.2652	28.3492	39
cluster_10.pdb ( medoid)	1.94491	14.9107	30.1746	29