CABS-dock: 6b89ab0ee3ca2b6

Project name: 6b89ab0ee3ca2b6

Status: done

submitted: 2025-04-15 20:37:36, status changed: 2025-04-15 20:49:19

Project settings

Protein sequence(s)	VESQTNGIIR input pdb
Peptide sequence	VESQTNGIIR
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	17.7397	8.34285	28.5428	148
cluster_2.pdb ( medoid)	17.704	5.98735	16.9324	106
cluster_3.pdb ( medoid)	13.7085	8.02419	25.9047	110
cluster_4.pdb ( medoid)	13.1216	9.60249	26.5473	126
cluster_5.pdb ( medoid)	10.8506	8.47879	28.2444	92
cluster_6.pdb ( medoid)	10.134	7.69684	28.029	78
cluster_7.pdb ( medoid)	8.97846	8.91022	28.8352	80
cluster_8.pdb ( medoid)	8.33194	10.9218	37.092	91
cluster_9.pdb ( medoid)	7.51416	12.7759	36.4704	96
cluster_10.pdb ( medoid)	5.01068	13.7706	34.5254	69