CABS-dock: PEPTIDE13

Project name: PEPTIDE13

Status: done

submitted: 2025-07-02 09:37:16, status changed: 2025-07-02 12:12:50

Project settings

Protein sequence(s)	EYPTVSEIPVGEVRLYQIADGVWSHIATQSFDGAVYPSNGLIVRDGDELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLRAAGVATYASPSTRRLAEVEGNEIPTHSLEGLSSSGDAVRFGPVELFYPGAAHSTDNLVVYVPSASVLYGGCAIYELSRTSAGNVADADLAEWPTSIERIQQHYPEAQFVIPGHGLPGGLDLLKHTTNVVKAHTN input pdb
Peptide sequence	IFFS
Simulation mc cycles	50
Peptide secondary structure psipred	CCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	28.626	6.53251	25.4543	187
cluster_2.pdb ( medoid)	20.9802	4.3851	21.6078	92
cluster_3.pdb ( medoid)	19.9518	6.06463	27.1094	121
cluster_4.pdb ( medoid)	17.6466	4.47678	14.0714	79
cluster_5.pdb ( medoid)	12.9721	7.40049	34.9229	96
cluster_6.pdb ( medoid)	12.714	9.67441	35.0271	123
cluster_7.pdb ( medoid)	12.2188	8.67513	26.3653	106
cluster_8.pdb ( medoid)	7.1629	11.8667	33.6638	85
cluster_9.pdb ( medoid)	6.71551	10.4236	25.6998	70
cluster_10.pdb ( medoid)	3.92016	10.4588	27.3733	41