CABS-dock: 6c410678efd7c57

Project name: 6c410678efd7c57

Status: done

submitted: 2026-03-08 14:13:54, status changed: 2026-03-08 20:20:38

Project settings

Protein sequence(s)	VKDFLSQLRSSNRRFSIPESGQGGTEMDGFRRTIENQHSRNDVMVSEWLNKLNLEEPPSSVPKKCPSLTKRSRAQEEQVPQAWTAGTSSDSMAQPPQTPETSTFRNQMPSPTSTGTPSPGPRGNQGAERQGMNWSCRTPEPNPVTGRPLVNIYNCSGVQVGDNNYLTMQQTTALPTWGLAPSGKGRGLQHPPPVGSQEGPKDPEAWSRPQGWYNHSGK input pdb
Peptide sequence	VQVFGDNNY
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	27.3133	4.43008	23.3192	121
cluster_2.pdb ( medoid)	23.8455	3.7743	19.0125	90
cluster_3.pdb ( medoid)	22.3284	6.53877	28.3756	146
cluster_4.pdb ( medoid)	14.4181	9.29389	24.2787	134
cluster_5.pdb ( medoid)	13.082	7.18543	19.6713	94
cluster_6.pdb ( medoid)	9.41427	12.3217	26.6476	116
cluster_7.pdb ( medoid)	7.81	13.1882	28.8033	103
cluster_8.pdb ( medoid)	6.69987	13.8809	32.6059	93
cluster_9.pdb ( medoid)	5.2549	11.6082	24.254	61
cluster_10.pdb ( medoid)	4.70822	8.92056	20.2066	42