CABS-dock: RUN01_PEP03_KK

Project name: RUN01_PEP03_KK_FLANKED

Status: done

submitted: 2026-07-22 05:38:43, status changed: 2026-07-22 11:37:20

Project settings

Protein sequence(s)

KRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITANSSK input pdb

Peptide sequence

KKSYSYDAPSDFINFSSKK

Simulation mc cycles

Peptide secondary structure

CCCCCCCCCCCCCCCCCCC

Contact information

166:A 4:PEP 5.0 1.0

179:A 6:PEP 5.0 1.0

126:A 12:PEP 5.0 1.0

157:A 15:PEP 5.0 1.0

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	49.8503	3.81141	10.8441	190
cluster_2.pdb ( medoid)	39.8593	3.13603	10.2527	125
cluster_3.pdb ( medoid)	39.4938	4.35511	7.79311	172
cluster_4.pdb ( medoid)	26.5007	4.15083	8.78387	110
cluster_5.pdb ( medoid)	17.0067	5.88004	11.6923	100
cluster_6.pdb ( medoid)	16.2	5.43211	9.57245	88
cluster_7.pdb ( medoid)	15.3665	4.22999	8.31425	65
cluster_8.pdb ( medoid)	14.5759	3.77336	7.88695	55
cluster_9.pdb ( medoid)	12.0675	4.39198	8.2176	53
cluster_10.pdb ( medoid)	10.3797	4.04636	7.31603	42