CABS-dock: 6d5bb4c70f952d1

Project name: 6d5bb4c70f952d1

Status: done

submitted: 2026-07-08 09:33:39, status changed: 2026-07-08 14:39:04

Project settings

Protein sequence(s)	KAVIKLQPPWVSSVFQEESVTLHCEVPGSSSTQWFLNGTAIQTSTPTYHITSASEDDSGEYRCQRGLSGRSDPIQLEVHRGWLLLQVSSRVLTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWNSNLTILKTNMSHSGTYHCSGMMGKHRYTSAGISVTVKELFPAPVLTASVTSPLLEGTPVTLSCETKLLLQRPGLQLYFSFYMMGSKTLRGRDTSSEYQILTARRREDSGLYWCEAATEDGNVLKRSPELELQVLG input pdb
Peptide sequence	DLDWVQEFNVELDSDY
Simulation mc cycles	50
Peptide secondary structure psipred	CCCHHHHCEEECCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	18.5736	6.46077	43.6805	120
cluster_2.pdb ( medoid)	18.5004	7.02686	20.9724	130
cluster_3.pdb ( medoid)	16.5523	10.5121	55.1905	174
cluster_4.pdb ( medoid)	15.0753	8.49071	27.4516	128
cluster_5.pdb ( medoid)	11.0624	10.6667	50.472	118
cluster_6.pdb ( medoid)	10.7797	7.79243	16.2834	84
cluster_7.pdb ( medoid)	10.4958	7.33627	14.6278	77
cluster_8.pdb ( medoid)	6.76278	10.7944	24.8462	73
cluster_9.pdb ( medoid)	3.96264	11.8608	30.1165	47
cluster_10.pdb ( medoid)	3.17106	15.4523	29.3544	49