CABS-dock: 6d820e96a574dc5

Project name: 6d820e96a574dc5

Status: done

submitted: 2025-04-22 17:25:08, status changed: 2025-04-22 19:26:23

Project settings

Protein sequence(s)	GQRWELALGRFWDYLRWVQTLSEQVQEELLSSQVTQELRALMDETMKELKAYKSELEEQLSKELQAAQARLGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAVYQ input pdb
Peptide sequence	LRKLRKRLLLRKLRKRLLC
Simulation mc cycles	50
Peptide secondary structure psipred	CHHHHHHHHHHHHHHHHCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	48.6704	2.09573	10.5751	102
cluster_2.pdb ( medoid)	31.0363	4.05977	12.9011	126
cluster_3.pdb ( medoid)	31.0353	4.28544	16.5995	133
cluster_4.pdb ( medoid)	21.0423	8.64925	33.2433	182
cluster_5.pdb ( medoid)	11.2914	8.41345	24.6293	95
cluster_6.pdb ( medoid)	11.1547	12.0129	34.8137	134
cluster_7.pdb ( medoid)	8.13164	15.0031	37.8993	122
cluster_8.pdb ( medoid)	6.06519	9.06814	30.8858	55
cluster_9.pdb ( medoid)	4.96714	5.43572	9.57575	27
cluster_10.pdb ( medoid)	4.3282	5.54503	11.2147	24