CABS-dock: 6da4874b94cfb6a

Project name: 6da4874b94cfb6a

Status: done

submitted: 2026-02-14 09:54:05, status changed: 2026-02-14 14:32:28

Project settings

Protein sequence(s)	GFQTFEGDLKWHHHNITYWIQNYSEDLPRAVIDDAFARAFALWSSAVTPLTFTRVYSRDADIVIQQFGVAEEHGDGYPFDGKDGLLAHAFPPGPGIQGDAHFDDDELWSLGKGVGYSLFLVAAHEFGHALGLDHSSVPEALLMYPMYRFTEGPPLHKDDVNGIRHLYG input pdb
Peptide sequence	EMFGTSSET
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	43.0663	2.85606	18.4661	123
cluster_2.pdb ( medoid)	30.4952	3.08245	9.67483	94
cluster_3.pdb ( medoid)	29.3396	6.06688	15.5496	178
cluster_4.pdb ( medoid)	18.8588	5.19651	10.567	98
cluster_5.pdb ( medoid)	18.6795	8.72613	28.9635	163
cluster_6.pdb ( medoid)	14.7263	8.69191	18.454	128
cluster_7.pdb ( medoid)	13.8648	6.05851	29.779	84
cluster_8.pdb ( medoid)	6.32845	8.84893	21.5585	56
cluster_9.pdb ( medoid)	4.46177	12.5511	25.7679	56
cluster_10.pdb ( medoid)	3.56322	5.6129	12.545	20