CABS-dock: PEPTIDE29

Project name: PEPTIDE29

Status: done

submitted: 2025-07-02 11:49:55, status changed: 2025-07-02 15:32:25

Project settings

Protein sequence(s)	EYPTVSEIPVGEVRLYQIADGVWSHIATQSFDGAVYPSNGLIVRDGDELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLRAAGVATYASPSTRRLAEVEGNEIPTHSLEGLSSSGDAVRFGPVELFYPGAAHSTDNLVVYVPSASVLYGGCAIYELSRTSAGNVADADLAEWPTSIERIQQHYPEAQFVIPGHGLPGGLDLLKHTTNVVKAHTN input pdb
Peptide sequence	FFFL
Simulation mc cycles	50
Peptide secondary structure psipred	CCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	51.19	2.32467	23.2907	119
cluster_2.pdb ( medoid)	33.2768	3.51596	18.8509	117
cluster_3.pdb ( medoid)	23.4013	8.07647	34.8161	189
cluster_4.pdb ( medoid)	20.7302	3.37672	11.2377	70
cluster_5.pdb ( medoid)	12.5398	11.4037	37.6432	143
cluster_6.pdb ( medoid)	11.9534	7.02731	19.6517	84
cluster_7.pdb ( medoid)	9.46786	13.625	37.8195	129
cluster_8.pdb ( medoid)	7.3375	4.9063	14.7004	36
cluster_9.pdb ( medoid)	6.8132	5.87095	12.5879	40
cluster_10.pdb ( medoid)	6.1676	11.836	32.2087	73