CABS-dock: FcGR1-2

Project name: FcGR1-2

Status: done

submitted: 2026-07-09 02:29:39, status changed: 2026-07-09 07:34:56

Project settings

Protein sequence(s)	KAVIKLQPPWVSSVFQEESVTLHCEVPGSSSTQWFLNGTAIQTSTPTYHITSASEDDSGEYRCQRGLSGRSDPIQLEVHRGWLLLQVSSRVLTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWNSNLTILKTNMSHSGTYHCSGMMGKHRYTSAGISVTVKELFPAPVLTASVTSPLLEGTPVTLSCETKLLLQRPGLQLYFSFYMMGSKTLRGRDTSSEYQILTARRREDSGLYWCEAATEDGNVLKRSPELELQVLG input pdb
Peptide sequence	DSYQAEELEEDSPFYN
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCHHHHHCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	35.3447	3.48001	9.32837	123
cluster_2.pdb ( medoid)	29.2924	7.88599	22.4157	231
cluster_3.pdb ( medoid)	18.1469	4.73909	16.6163	86
cluster_4.pdb ( medoid)	16.6603	5.88226	20.2347	98
cluster_5.pdb ( medoid)	12.209	6.63446	29.436	81
cluster_6.pdb ( medoid)	11.2978	9.1168	26.8246	103
cluster_7.pdb ( medoid)	10.7436	11.2625	45.2531	121
cluster_8.pdb ( medoid)	9.29532	8.60648	26.837	80
cluster_9.pdb ( medoid)	8.61879	6.14936	15.3639	53
cluster_10.pdb ( medoid)	2.08194	11.5277	23.5281	24