CABS-dock: 6) C0HL39

Project name: 6) C0HL39

Status: done

submitted: 2026-01-14 09:25:52, status changed: 2026-01-14 15:00:13

Project settings

Protein sequence(s)	MSRIILFAAILAIIAVSANGASNLPALDMASIPDEYKDLVPPEVTTFYNELTEDDKKILKEVAEKHSEYATDEDALNALKEKSEKLYTKANELRNLVKDRISKLNPEAKTFVDTIIEKLKALRPKEDEKPNLTELRKEANEIVEKFKALSEEAKESLKTNFPKITGVIQNEKFQKLAQSLLKPEGAAAPA input pdb
Peptide sequence	LGPQLNKGCATCSIGAACLVDGPIPDEIAG
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCCCEEEECCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	43.1977	2.36124	28.5611	102
cluster_2.pdb ( medoid)	19.1359	6.74125	39.0804	129
cluster_3.pdb ( medoid)	17.593	5.17251	14.9695	91
cluster_4.pdb ( medoid)	11.2748	10.1997	19.3897	115
cluster_5.pdb ( medoid)	9.80299	13.2613	39.2166	130
cluster_6.pdb ( medoid)	7.91223	10.2373	26.1494	81
cluster_7.pdb ( medoid)	7.66104	12.792	30.1181	98
cluster_8.pdb ( medoid)	7.36083	16.5742	35.4722	122
cluster_9.pdb ( medoid)	6.25112	13.5976	31.8119	85
cluster_10.pdb ( medoid)	2.57267	18.2689	37.4602	47