CABS-dock: akbb

Project name: akbb

Status: done

submitted: 2026-03-15 05:42:03, status changed: 2026-03-15 20:31:42

Project settings

Protein sequence(s)	SIGFIDRQLGTNPAELPPLPYGYDALEKAIDAETMKLHHDKHHAAYVNNLNNALKKHPELQNSSVEALLRDLNSVPEDIRTTVRNNGGGHLNHTIFWQIMSPDGGGQPTGDIAQEINQTFGSFEEFKKQFNQAGGDRFGSGWVWLVRNPQGQLQVVSTPNQDNPIMEGSYPIMGNDVWEHAYYLRYQNRRPEYLNNWWNVVNWSEINRRTQASSIGFIDRQLGTNPAELPPLPYGYDALEKAIDAETMKLHHDKHHAAYVNNLNNALKKHPELQNSSVEALLRDLNSVPEDIRTTVRNNGGGHLNHTIFWQIMSPDGGGQPTGDIAQEINQTFGSFEEFKKQFNQAGGDRFGSGWVWLVRNPQGQLQVVSTPNQDNPIMEGSYPIMGNDVWEHAYYLRYQNRRPEYLNNWWNVVNWSEINRRTQAS input pdb
Peptide sequence	AEPEQ
Simulation mc cycles	50
Peptide secondary structure	CCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	66.5122	2.08984	33.2312	139
cluster_2.pdb ( medoid)	44.5621	4.12907	26.2591	184
cluster_3.pdb ( medoid)	20.3957	6.07971	31.0055	124
cluster_4.pdb ( medoid)	18.9794	3.7409	33.5609	71
cluster_5.pdb ( medoid)	14.7894	8.92529	28.6569	132
cluster_6.pdb ( medoid)	14.2268	10.684	38.5949	152
cluster_7.pdb ( medoid)	9.74868	5.84695	21.0216	57
cluster_8.pdb ( medoid)	5.84967	10.9408	36.2453	64
cluster_9.pdb ( medoid)	4.32799	8.78005	29.1994	38
cluster_10.pdb ( medoid)	2.81248	13.8668	30.7547	39