CABS-dock: 734b689523ba488

Project name: 734b689523ba488

Status: done

submitted: 2026-01-21 18:03:52, status changed: 2026-01-22 03:18:52

Project settings

Protein sequence(s)	PMFEIDCNVTTPFIGNIQIYDISDAEMRISNFINTKCYSQTGVLIQDIPSWITLGTKSPYTFSTLNRFIVVGCDDGAIVSGNNFANGCPSLCTSTNDIVKGKCMGFGCCQITIPKGLKFFNTTMVTTRNHSLIWSFNPCGHSFLGEASRFEFQGIEDLSDVNFANKIRNNVPIVLDWAIGNLSCVEARKSNDYACLNNSQCVDSDTSLGGYRCSCNSGYIGNPYIGSGCQDIDECADPNTNSCEKICTNIPGSYNCSCPEGYTGDGRKNGRGCIAPNSNSEFPWIK input pdb
Peptide sequence	GENQKPMFELAEGATLKNVNLGENE
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCEEECCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	54.7354	1.88178	25.8706	103
cluster_2.pdb ( medoid)	18.1277	7.50231	22.5953	136
cluster_3.pdb ( medoid)	12.3304	3.97392	7.36215	49
cluster_4.pdb ( medoid)	9.47892	12.2377	34.7219	116
cluster_5.pdb ( medoid)	6.71169	8.34365	28.049	56
cluster_6.pdb ( medoid)	6.53845	13	32.4217	85
cluster_7.pdb ( medoid)	6.04359	8.27323	23.5288	50
cluster_8.pdb ( medoid)	5.95965	10.5711	25.425	63
cluster_9.pdb ( medoid)	4.05314	6.6615	13.9856	27
cluster_10.pdb ( medoid)	3.07795	13.9703	26.8591	43