CABS-dock: PEPTIDE25

Project name: PEPTIDE25

Status: done

submitted: 2025-07-02 11:46:18, status changed: 2025-07-02 15:36:49

Project settings

Protein sequence(s)	EYPTVSEIPVGEVRLYQIADGVWSHIATQSFDGAVYPSNGLIVRDGDELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLRAAGVATYASPSTRRLAEVEGNEIPTHSLEGLSSSGDAVRFGPVELFYPGAAHSTDNLVVYVPSASVLYGGCAIYELSRTSAGNVADADLAEWPTSIERIQQHYPEAQFVIPGHGLPGGLDLLKHTTNVVKAHTN input pdb
Peptide sequence	IFKNK
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	22.941	4.4026	13.5592	101
cluster_2.pdb ( medoid)	19.7099	10.1979	40.3846	201
cluster_3.pdb ( medoid)	13.62	7.48901	23.2032	102
cluster_4.pdb ( medoid)	13.4383	6.99493	21.1134	94
cluster_5.pdb ( medoid)	11.5057	7.64838	23.0611	88
cluster_6.pdb ( medoid)	10.2465	11.7113	33.7621	120
cluster_7.pdb ( medoid)	10.0405	5.677	18.6473	57
cluster_8.pdb ( medoid)	9.9603	9.33707	35.1709	93
cluster_9.pdb ( medoid)	8.98971	10.0114	34.6436	90
cluster_10.pdb ( medoid)	6.39557	8.44335	21.2734	54